PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001407-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 274aa    MW: 30601.6 Da    PI: 6.0506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001407-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18132181355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrd + ng   r+++g+f++ae+Aa a+++a+ +++g
  AHYPO_001407-RA 132 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDSAEDAALAYDQAAFAMRG 181
                      9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-13131181IPR001471AP2/ERF domain
SMARTSM003801.5E-35131195IPR001471AP2/ERF domain
PROSITE profilePS5103222.748131189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-30131190IPR001471AP2/ERF domain
CDDcd000181.74E-29132189No hitNo description
PRINTSPR003675.7E-10132143IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22132191IPR016177DNA-binding domain
PRINTSPR003675.7E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSQYQSQNYS SYNHHYNNHP QPNPTESDSS SSAGSSESFP WDEFWTNYNS ISIPQLPINI  60
NDSDEIALYN MLSEQDMQKG SRVVIDLASC ASTNSSSTSE SGKRSHKGVK TDPTSPPSAN  120
SSSTPESGIR SYRGVRRRPW GKFAAEIRDS TRNGVRVWIG TFDSAEDAAL AYDQAAFAMR  180
GPMAVLNFPM EIVRDSLKEM KKEQEDIQED DDGCSASPVI ALKRKHLMRR KSMGINGRKR  240
DRKQKNQSNF SSENTVIFED LGNDYLEQLL NCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28130192163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222242KRKHLMRRKSMGINGRKRDRK
2236243GRKRDRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679245.11e-111PREDICTED: ethylene-responsive transcription factor 1B
TrEMBLA0A0K9RNZ05e-96A0A0K9RNZ0_SPIOL; Uncharacterized protein
STRINGXP_010679245.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-38ethylene response factor 1