PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001473-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 253aa MW: 28008.7 Da PI: 6.308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001473-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	92	144	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + hn+ E+ RR ++N+ + +Lr+llP + +kK s i +A eY+ +Lq AHYPO_001473-RA 92 KLDHNAKEKVRRLKLNETYLTLRSLLPDsR--RAKKKWSAPYIIDRALEYVPQLQ 144 678***********************55..45566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.07E-8	88	148	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-10	89	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.373	90	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	90	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	92	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-5	96	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MFLQDHDQDY ALIGQYDDPN IQETINWPIS PIEQVGPSKV VVEDSSLGYH DMQYYGPTTA 60 TAPAITTATA TTDDQTVAAV GGGVGEGSTS KKLDHNAKEK VRRLKLNETY LTLRSLLPDS 120 RRAKKKWSAP YIIDRALEYV PQLQAEIEKL TLEKNNMVSV LGKKQRQIDV GRDDHESNKV 180 NKTLTVSINE VKTGEVIVQI CEHNNKIGIL SNLIGKLEAQ GMQVLGASSQ HACEDRSCFH 240 LHIQVTSICF LY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770033.1	1e-109	transcription factor bHLH160-like isoform X1
TrEMBL	A0A0K9RLF1	9e-86	A0A0K9RLF1_SPIOL; Uncharacterized protein
STRING	XP_010679419.1	2e-78	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	8e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_001473-RA