PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001483-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 439aa    MW: 49044.8 Da    PI: 9.9356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001483-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l d+++++  + + +Ia +++ +Rt +++k+r+++
  AHYPO_001483-RA 129 KWTKEETDTLFDLCERFDLR-FVLIADRFPSNRTVEELKDRYYS 171
                      8*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.7E-31102176IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466893.83E-7126177IPR009057Homeodomain-like
SMARTSM007179.1E-10126175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-7128173IPR009057Homeodomain-like
CDDcd116588.37E-18130172No hitNo description
PfamPF054992.0E-6308370IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDAKDILGIP KNALPISQEK KSKPPKEPQR KPDGISREVY MLTGGVAPLM PAVDVSQLKK  60
RPPTDEKVTW RWLSFTNSAR KDNLELYHWV RVVNGVPPTG DYPFAKYNKS VDIIKYTDEE  120
YEKYLTDPKW TKEETDTLFD LCERFDLRFV LIADRFPSNR TVEELKDRYY SVSRAILVAR  180
ASSPAEVSFH PLIKEPYNIK QETERKKALS MVLSHTKYQE RKDAEILAAA KKIQESRISA  240
KGAEESGLPS ASDPGVEPSD RAVQPESWSP IAAAPTAAGD NATPASLRML RVYLRTYALD  300
QMVQAASASA GLRTIKRVEQ TLQDLGVNLK PKVPTKAVCA EHLELRKEIL TLLNLQKQLQ  360
YKEAEGSSHR DGSYTDTPGS PKRSHRAGDQ DRAFVPEPIS FGGDRVGKRD QKRKGPGRSS  420
DVPSSPATKR ARKMKAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A4e-22101181488DNA methyltransferase 1-associated protein 1
4iej_A4e-22101181488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836734.10.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A0K9RJG50.0A0A0K9RJG5_SPIOL; Uncharacterized protein
STRINGXP_010679468.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]