PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001499-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 932aa    MW: 103533 Da    PI: 6.5922
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001499-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.21.7e-41144221178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C  dls+ak+yhrrhkvCevhska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  AHYPO_001499-RA 144 ICQVEDCGIDLSKAKDYHRRHKVCEVHSKASQALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTQP 221
                      5**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-33137206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-38143224IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29145218IPR004333Transcription factor, SBP-box
SMARTSM00248290704734IPR002110Ankyrin repeat
SuperFamilySSF484039.02E-8707814IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-7708817IPR020683Ankyrin repeat-containing domain
CDDcd002047.13E-8709810No hitNo description
SMARTSM002481.4757787IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MEQAHRFHSI DPSELRVMGK RGLEWDLNDW KWDGDLFIAR PSNSIPTNFQ GQQFIPVLAG  60
NSSNCSSSCS DDVQYGVDDG RRELERKRRV IVVEEDGLGE SGSLTLKLGG NCNPAIDRER  120
EGVNWEGTSG KKAKVTGGSS NRAICQVEDC GIDLSKAKDY HRRHKVCEVH SKASQALVAN  180
VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTQ PETAVQGSSV NDEQTSSVLL  240
MSLLKILSDM HANNRPDQAT DQDLVVQLLR GLANPSLHMG KGLSGLQPES QKLLNGGIAN  300
DNGHSKKMSA FLSNDNRNPP RHIDQHVPLP DSEIPGKGVY AANNRGVDMQ AGSLFPIKDS  360
PPGYSTEGRM KLNNFDLNDV YVDSDDGIED LERSPVNGNF ATGSVDFPLW ARQDSHQSSP  420
PQTSGNSDSA SALSPSSSSG EASILDWLAH SPTDIESYIR PGCIILTIYL RLTESLWEEL  480
CSDLSSRLTR LFDITDDSFW RTGWVYVRVQ NQIAFVHNGQ VVLDTSMSLD NNSCSRILSV  540
MPIAVSMDER AHFEVRGFNL SHSTTSYVFD QKICRVEDLG LSSSFFPFIV AEKDVCSEIR  600
TLESVLEPKN SDQDVYEANK NIESWRQAMD FIHEMGWLLH RSHMKSRLAD LDPSTVVFSF  660
RRYKWLMDFS MDHDWCAVVK KLLDILVAGT VGSGEHPSLK VALSEMGLLH RAVRRNSRSM  720
VELLLRYVPA TLSEEFTSVA ESSQEKFLFR PDAQGPGGLT PLHVAAGRDG SDDVLDALID  780
DPGKIGIETW KNSRDSTGAT PEDYARLRGH YSYIHVVQRK MPRSSASGHV VLDIPGEPSV  840
AAPKHDGAVS FEIGRSASFA LNQNCKMCDH KKMLAYYGRS TKTSLAYRPL MLSMVGIAAV  900
CVCVALLFKS MPNVVCLFQP FRWELLNYGS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32136218284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0953101e-87AY095310.1 Amaranthus palmeri x Amaranthus rudis clone 21B.206 hybrid progeny specific sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678887.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A0J8BDT70.0A0A0J8BDT7_BETVU; Uncharacterized protein
STRINGXP_010678887.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]