PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001551-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 288aa    MW: 33096.3 Da    PI: 4.6666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001551-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1978132357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      k+++++ eq++ Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa++k+
  AHYPO_001551-RA  78 KKRRLSIEQVQFLEKSFEVENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWKN 132
                      5668999**********************************************95 PP
2HD-ZIP_I/II104.96.3e-3477141165
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 
                      ekkrrls eqv++LE+sFe e+kLep+rK +la+eLglqprqva+WFqnrRAR+k+kqlEkd++ 
  AHYPO_001551-RA  77 EKKRRLSIEQVQFLEKSFEVENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWKNKQLEKDFDN 141
                      69************************************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2065135IPR009057Homeodomain-like
PROSITE profilePS5007117.45973133IPR001356Homeobox domain
SMARTSM003898.4E-2076137IPR001356Homeobox domain
PfamPF000462.6E-1678132IPR001356Homeobox domain
CDDcd000861.21E-1878134No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1980140IPR009057Homeodomain-like
PRINTSPR000316.1E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000316.1E-6113129IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MADRVFNGSL LFNQSLPHSS HSPEPFFISG SSSSFLGSSS MVSFKDVCRG KRSERPFFYD  60
QEENGDEDFD DYFHQPEKKR RLSIEQVQFL EKSFEVENKL EPDRKIQLAK ELGLQPRQVA  120
IWFQNRRARW KNKQLEKDFD NKLLLKENKQ GSETYTEPKT VQEEPIIESA SGSSDHQISL  180
INYKQEDLCS AKSDVIDSDS PHYVDATHHS TFAEPGDSSY AFEADHSDIS QDDEDYLNKS  240
LLPSSHVFSK IGDVDYPDRP TNSCYYGLSG EDHASLYWPY WDINLKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKNKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850966.11e-145homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0K9R4D11e-143A0A0K9R4D1_SPIOL; Uncharacterized protein
STRINGXP_010678585.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-33homeobox 1