PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001576-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

ZF-HD

Protein Properties

Length: 86aa MW: 9335.5 Da PI: 8.3875

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001576-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.1	3.3e-31	23	79	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + +Y eC+kNhAas+Gg+avDGC+Efm+ g+egt++al CaACgCHRnFHR++ + e AHYPO_001576-RA 23 TNEYWECQKNHAASIGGYAVDGCREFMAM-GAEGTSNALVCAACGCHRNFHRKQAHAE 79 568***********************9.999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-23	1	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-28	25	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.958	26	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.7E-26	26	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MKKRQVVVKR VEGSRTINNN STTNEYWECQ KNHAASIGGY AVDGCREFMA MGAEGTSNAL 60 VCAACGCHRN FHRKQAHAEV VCESS*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, such as ZHD5, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by preventing the expression of genes involved in gibberellic acid (GA), auxin and brassinosteroid signaling and by promoting the expression of abscisic acid (ABA)-responsive genes. Regulates several development aspects, including photomorphogenesis, apical dominance, longevity, flower morphology and fertility, as well as root and stem elongation. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:16412086, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021733844.1	8e-46	mini zinc finger protein 1-like
Refseq	XP_021733845.1	8e-46	mini zinc finger protein 1-like
Swissprot	Q9CA51	3e-30	MIF1_ARATH; Mini zinc finger protein 1
TrEMBL	A0A0K9QYF5	6e-42	A0A0K9QYF5_SPIOL; Uncharacterized protein
STRING	XP_010678523.1	5e-41	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	1e-32	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	AHYPO_001576-RA