PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001585-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 188aa    MW: 21389 Da    PI: 6.525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001585-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-181868155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t e+Aa a++ a+  l+g
  AHYPO_001585-RA 18 SIYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTQEMAAVAYDVAAYHLRG 68
                     57*****999.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-121868IPR001471AP2/ERF domain
CDDcd000186.71E-231878No hitNo description
SuperFamilySSF541716.28E-231877IPR016177DNA-binding domain
PROSITE profilePS5103223.4061976IPR001471AP2/ERF domain
SMARTSM003801.2E-381982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-321977IPR001471AP2/ERF domain
PRINTSPR003674.5E-102031IPR001471AP2/ERF domain
PRINTSPR003674.5E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEENMINSHA RSRGGIASIY RGVRKRKWGK WVSEIREPGK KTRIWLGSFD TQEMAAVAYD  60
VAAYHLRGRG AHLNFPELAN ELPCPTSSRA EDIRRVAQEV ATTLQSRMTR NSMQETSNVT  120
TQPTYSFYSS PPRVGLSPWE IQAINESPLE SPKTWASMTD MIEDPYMYSS TYIPWGEEEL  180
PNHSLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-172080667ATERF1
3gcc_A3e-172080667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739887.14e-79ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I24e-47ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0K9RAT42e-74A0A0K9RAT4_SPIOL; Uncharacterized protein
STRINGXP_010683050.16e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-49ERF family protein