PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001637-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 245aa    MW: 26822.1 Da    PI: 4.5853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001637-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181564255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a ++++g
  AHYPO_001637-RA 15 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDKASRSMRG 64
                     678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-301571No hitNo description
Gene3DG3DSA:3.30.730.104.6E-291571IPR001471AP2/ERF domain
PROSITE profilePS5103220.4551572IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-201572IPR016177DNA-binding domain
SMARTSM003801.2E-321578IPR001471AP2/ERF domain
PfamPF008472.6E-111664IPR001471AP2/ERF domain
PRINTSPR003672.9E-81627IPR001471AP2/ERF domain
PRINTSPR003672.9E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTTKTTSQQP NPPVKFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE AALAYDKASR  60
SMRGPRARTN FVYPDMPPGT SVTSIPCPND PNQTQFNPHS NQQQFSLSTN EFNYNTDSVF  120
PSSLFSQEND NYASYGYNYG NYINGSNNDD NNGGYVNNGN EIELPPLPDQ YTRDLGQGSR  180
VDPFGGSVVG GSTFGGSTVG GSMSDYMGLD TTMAGYVHSP LFSSMPTVEH GLDPFDLGSS  240
SYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-191671359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-1915711471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735788.15e-89ethylene-responsive transcription factor LEP-like
TrEMBLA0A1R3ISV98e-59A0A1R3ISV9_COCAP; Uncharacterized protein
STRINGXP_010682226.11e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-42ERF family protein