PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001663-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 308aa MW: 33877.9 Da PI: 6.1378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001663-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.3	7.1e-11	53	89	2	40
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy 40 +pGfrFhPt+eelv +yL++kvegkk+++e i+ +++y AHYPO_001663-RA 53 MPGFRFHPTEEELVEFYLRRKVEGKKFNAE--ISLCRVY 89 79************************8873..4444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-9	52	82	IPR003441	NAC domain
Pfam	PF02365	1.5E-7	54	107	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAIATTMNLT NAVNINNNNN NNCLNNEEKQ QQQQNQQQQQ QDDDDEHDHD TVMPGFRFHP 60 TEEELVEFYL RRKVEGKKFN AEISLCRVYK RAGVEDHPSV PRGNIPTRLS SSSKATSSAS 120 SERKNYHNAF RAQTTSLQQQ MEHYNQQHQS GNSIVASFQL EKVNEMDASS STEVGTALGL 180 SHPTSYSEVS PLPQSQPHPQ SQPLRPPFVE ANRMMHLLND HPNLKQQQVV GSSGGGGDGD 240 GDGVNNPPTT PPPTATVVGG GSSTSLQLPP VTGASVGGGH PFHDRSLWDW NLYSEPNTRD 300 HFSNLFK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866240.1	3e-34	NAC domain-containing protein 35
TrEMBL	A0A0K9RMX9	5e-33	A0A0K9RMX9_SPIOL; Uncharacterized protein
STRING	XP_010682089.1	5e-32	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	3e-14	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	AHYPO_001663-RA