PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001667-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 586aa MW: 66725.6 Da PI: 9.1817

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001667-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.4e-09	563	585	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++Cr++++ G+C++GdrCkF Hg AHYPO_001667-RA 563 QKPCRYYLQ-GYCHHGDRCKFKHG 585 689****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.6E-6	95	141	IPR003034	SAP domain
SuperFamily	SSF68906	3.3E-6	95	141	No hit	No description
PROSITE profile	PS50800	9.866	106	140	IPR003034	SAP domain
Pfam	PF02037	3.1E-7	108	140	IPR003034	SAP domain
Gene3D	G3DSA:4.10.1000.10	3.1E-5	558	585	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-6	559	584	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.549	560	585	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-6	563	585	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MAYCSFNAKT PVDSDDYIEM DYSDGQFFDS DDSEDVPTYI VDLDKAQSKL SSLSSKSNSN 60 SSKESTKSEV NDGVVTNLEE KSQSKLGIED KKCFEEVQRL IDGGKVEELK LEQCKVYLRK 120 HGLRLTGKKD ILIQRIKEHL EIINGGGEKK YPESSFLLNC KGDACTGDIV MFQQTVYEGY 180 SIVSRSAIGA PCGKRTVAGR IVKESYGAAK QQHTFTVEVL WSKGEKPLPP LHPLLIKGRN 240 LYKLNTLRQR WEDESQRQRV LSEKHNRGFI ARSNREVRIQ VKMSRQMLKD ARTFSKEGQH 300 SCQEKNHEHA KDHVGSKDPK QQTVAMQTQK LQSNHVQNFK AAAQLEKNSN TGLTRSQPPL 360 LNGPNDPTSQ GCFSYRDPNF QHSRPTNFTS WAFSHFSDKF QQQHYWEYKE NVNHEHAKDH 420 VGSKDPKQQT VIMQIQKLQS NHVQNLKAAA QLEKNSITGS TRSQPPQLNG PNDQTSRGCL 480 SYRDPNIQHS GPANSISVAY SRFPDKFQQQ HYREYKENVP QPGLHPCLFQ MNVSNDETNR 540 QLLVSNGASS LNFPGIYHHK ERQKPCRYYL QGYCHHGDRC KFKHG*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MAYCSFNAKT PVDSDDYIEM DYSDGQFFDS DDSEDVPTYI VDLDKAQSKL SSLSSKSNSN  60
SSKESTKSEV NDGVVTNLEE KSQSKLGIED KKCFEEVQRL IDGGKVEELK LEQCKVYLRK  120
HGLRLTGKKD ILIQRIKEHL EIINGGGEKK YPESSFLLNC KGDACTGDIV MFQQTVYEGY  180
SIVSRSAIGA PCGKRTVAGR IVKESYGAAK QQHTFTVEVL WSKGEKPLPP LHPLLIKGRN  240
LYKLNTLRQR WEDESQRQRV LSEKHNRGFI ARSNREVRIQ VKMSRQMLKD ARTFSKEGQH  300
SCQEKNHEHA KDHVGSKDPK QQTVAMQTQK LQSNHVQNFK AAAQLEKNSN TGLTRSQPPL  360
LNGPNDPTSQ GCFSYRDPNF QHSRPTNFTS WAFSHFSDKF QQQHYWEYKE NVNHEHAKDH  420
VGSKDPKQQT VIMQIQKLQS NHVQNLKAAA QLEKNSITGS TRSQPPQLNG PNDQTSRGCL  480
SYRDPNIQHS GPANSISVAY SRFPDKFQQQ HYREYKENVP QPGLHPCLFQ MNVSNDETNR  540
QLLVSNGASS LNFPGIYHHK ERQKPCRYYL QGYCHHGDRC KFKHG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716070.1	1e-143	zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A0K9QHJ2	1e-131	A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRING	XP_010685268.1	1e-137	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_001667-RA