PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001677-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 419aa    MW: 47718.8 Da    PI: 7.8323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001677-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09396418326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++Cr++++ G C+yGdrCkF Hg
  AHYPO_001677-RA 396 QKPCRHYLQ-GNCHYGDRCKFKHG 418
                      689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-5392417IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.028393418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5395418IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6396418IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAKCSFNAKN PEDLDDYIEM DDSDDQFFDS DDSEDDPTYI VDLDKAQLKL SNLSIKSDSN  60
SSNESARLEV DDGVVTDLEE KSQSKLGIDG KCFEEVQRLI DGDACTGDIV MFQQTVYEGY  120
NIVSRSAIGA PCGKRTVAGR IVKESYGAAK QQHTFTVEVL WSKGEKPLPP LHPLLIKGRN  180
LYKLNTLRQR WEDESQRQQV LSEKHNRGFI ARSNREVRIQ VKMSRQMLKG ARTFSKEGQH  240
SCQEKNHEHA KDHVGSKDPK QQTVAMQTQK LQSNHVQNIK AAAQLEKNSN TGLTRSQPPL  300
LNGPNDPTSQ GCFSYRDPNF QHSRPTNFTS QAFSHFSDKF QQQHYWEYKE NVPQPGLHPH  360
PYQTNASNNG RNHQLLVSNS VSSLNYYGRY HHNERQKPCR HYLQGNCHYG DRCKFKHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716070.11e-113zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A0K9QHJ27e-94A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRINGXP_010685268.11e-100(Beta vulgaris)