PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001692-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Nin-like

Protein Properties

Length: 819aa MW: 91206.9 Da PI: 6.7985

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001692-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	519	570	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ AHYPO_001692-RA 519 AEKTVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 570 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	504	590	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-25	523	570	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.41E-21	711	799	No hit	No description
PROSITE profile	PS51745	21.572	718	800	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-23	718	799	No hit	No description
SMART	SM00666	1.6E-20	718	800	IPR000270	PB1 domain
CDD	cd06407	5.56E-31	719	799	No hit	No description
Pfam	PF00564	1.6E-17	719	799	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MVMEYSLDYN KVGHNFWASS SPNSSDIPIK PTENQSINMS EMMGLDGYSE WCNIPSSNDS 60 NEKSFASFPY SSHPFIASNH DCCDRKQPNC VFPTVSVYGS PVDATTDDYD GCGMFVQSEN 120 SVPGPVGNSL PERMVRALSV FKESSGGGIL AQVWVPVRRG DHYILSTSEQ PYLLDEMLLG 180 YREVSRSYTF SIEQKPGSFP GLPGRVFMSK MPEWTSNVSY YSSAEYLRVQ HARHHQVRGS 240 VALPIFTQQA SCCAVLELVT CFSPNQKTAL AEITDVLRAV CNTHGLPLAL TWIPCTFEEG 300 DGYKIFQIQV KDNSLNLNKK SVLCIEETAC YVTDKRMQEF VHACAEHFLE EGQGVAGKAL 360 QTNRPFFFCD VKNYHISEYP HVLHARKFGL NAAVAIRLRS TYTGVDDYVL EFFLPPNINE 420 NKEQQLLLDS LSGTIQRVCK SLRTVSDAEL VDSIDPKGDP CGVSQSLFTN DRPLTQDGSN 480 GSRRSLDRLM IVNDCIKEDG YVEQASGLSK PMEKKRSTAE KTVSLGVLQQ YFSGSLKDAA 540 KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVGGG LKFDLTTGEL 600 VAGCSVNQSD SCTIRNHVVQ ENHAHKRKKS SKIVQGAQHN LDFNSGLLHN QYRADSQAPR 660 YMTPHEPENE DRVIEHNQAT TSGMTDSSNA SGSMSSLPSI GKQRLRKDKT NNEDPKSRIT 720 IKATYKEDTV RFKFEPSAGC LHLYEEVAKR FEIQRGTFQL KYIDDEDEWV MLVSDLDLQE 780 CLETMECLGK NSIKFLVRDL GFGMGSLVGS NRVLPGSC*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MVMEYSLDYN KVGHNFWASS SPNSSDIPIK PTENQSINMS EMMGLDGYSE WCNIPSSNDS  60
NEKSFASFPY SSHPFIASNH DCCDRKQPNC VFPTVSVYGS PVDATTDDYD GCGMFVQSEN  120
SVPGPVGNSL PERMVRALSV FKESSGGGIL AQVWVPVRRG DHYILSTSEQ PYLLDEMLLG  180
YREVSRSYTF SIEQKPGSFP GLPGRVFMSK MPEWTSNVSY YSSAEYLRVQ HARHHQVRGS  240
VALPIFTQQA SCCAVLELVT CFSPNQKTAL AEITDVLRAV CNTHGLPLAL TWIPCTFEEG  300
DGYKIFQIQV KDNSLNLNKK SVLCIEETAC YVTDKRMQEF VHACAEHFLE EGQGVAGKAL  360
QTNRPFFFCD VKNYHISEYP HVLHARKFGL NAAVAIRLRS TYTGVDDYVL EFFLPPNINE  420
NKEQQLLLDS LSGTIQRVCK SLRTVSDAEL VDSIDPKGDP CGVSQSLFTN DRPLTQDGSN  480
GSRRSLDRLM IVNDCIKEDG YVEQASGLSK PMEKKRSTAE KTVSLGVLQQ YFSGSLKDAA  540
KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVGGG LKFDLTTGEL  600
VAGCSVNQSD SCTIRNHVVQ ENHAHKRKKS SKIVQGAQHN LDFNSGLLHN QYRADSQAPR  660
YMTPHEPENE DRVIEHNQAT TSGMTDSSNA SGSMSSLPSI GKQRLRKDKT NNEDPKSRIT  720
IKATYKEDTV RFKFEPSAGC LHLYEEVAKR FEIQRGTFQL KYIDDEDEWV MLVSDLDLQE  780
CLETMECLGK NSIKFLVRDL GFGMGSLVGS NRVLPGSC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682023.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0J8C6U7	0.0	A0A0J8C6U7_BETVU; Uncharacterized protein
STRING	XP_010682023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_001692-RA

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]