PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001712-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 338aa    MW: 37742.4 Da    PI: 8.0773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001712-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.27.2e-15261285226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ +++tG C+yGd C+FaHg
  AHYPO_001712-RA 261 KTELCNKWQETGSCPYGDHCQFAHG 285
                      9***********************8 PP
2zf-CCCH17.95.4e-06298322125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      ykte Cr  +++  C+yG rC+F H
  AHYPO_001712-RA 298 YKTEVCRMVLAGDPCPYGHRCHFRH 322
                      9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-18254292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-11256291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892259287IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-8259286IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-12261285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-11293322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-8294323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821297325IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4297324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQQDTMTMKQ NSSPPQLSDI LNPPPYSSIF FHSSSSPMTL TPAPTTSDNK SVTATASIAE  60
YLSTLMSEHK ELLKRHALCL TQLSKTFKEA ETLRQENTNL RMANLELGNQ VHLLIQATRR  120
NRYNTKSLSN STEQYTSSFM SSISDQFSGD SEKEKEYGGL KEEFTSQGQN SNSKMTEEDV  180
SGSEEDEEAR VTLPKSISVR SNGFLKMNQT SGTRNNSSPL HSATRIRAPG SVSGPKKVYV  240
RGGSKKDGTM ELEVYNQGML KTELCNKWQE TGSCPYGDHC QFAHGINELR PVIRHPRYKT  300
EVCRMVLAGD PCPYGHRCHF RHALTNEEKL MVPLKLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20261322566Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844986.11e-147zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-76C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV41e-146A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-74C3H family protein