PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001785-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 269aa    MW: 29585.2 Da    PI: 7.1372
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001785-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.7e-16199235135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +Cg ++  Tp++Rrgp+g++tLCnaCGl ++ kg+
  AHYPO_001785-RA 199 CGHCGISSksTPMMRRGPNGPRTLCNACGLAWANKGT 235
                      9****99899************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.4E-75792IPR010399Tify domain
PROSITE profilePS5132012.6745792IPR010399Tify domain
PfamPF062007.8E-96491IPR010399Tify domain
PROSITE profilePS5101712.54133175IPR010402CCT domain
PfamPF062031.2E-13133175IPR010402CCT domain
SMARTSM004011.7E-11193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12196247No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14198240IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.06E-15199242No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
PfamPF003206.1E-14199235IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091206251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MYANDQHLSV PSSPTHLQES QMLIDDNGAI QGVENSIDDG SLAFEGDSVY AVDNYGRIED  60
CDKLTLSFRG QIYVFDSITP DKVEAVLLVL GGNVGGVTPS PASQSSEVPH VGVGNMSQQD  120
MMVYPGRSSH PQREASLNRF RQKRRERRFD KIIRYNVRQE VALRMQRTKG QFTSKKGDES  180
SGCNTQDSGL DDTQLETLCG HCGISSKSTP MMRRGPNGPR TLCNACGLAW ANKGTLRDLS  240
KKHNQFTMPS EVVSFSLSLI FCFSHNLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147QKRRERR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671518.11e-139PREDICTED: GATA transcription factor 24 isoform X1
SwissprotQ8GXL73e-66GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9R6Z51e-130A0A0K9R6Z5_SPIOL; Uncharacterized protein
STRINGXP_010671518.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-57ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]