PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001833-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family S1Fa-like
Protein Properties Length: 101aa    MW: 10868.9 Da    PI: 10.4307
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001833-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA142.39.7e-4533100370
             S1FA   3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                      v +veakGlnPGlivllv+ggll++flvgny+ly+yaqknlPP+kkkPvskkk+kre+lkqGva+PGe
  AHYPO_001833-RA  33 VDEVEAKGLNPGLIVLLVIGGLLITFLVGNYVLYTYAQKNLPPKKKKPVSKKKMKRERLKQGVAPPGE 100
                      6789***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-432100No hitNo description
PfamPF046893.6E-3936100IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
VYCLGNSPLL GLIHHANLKG QREGVQFGSY GAVDEVEAKG LNPGLIVLLV IGGLLITFLV  60
GNYVLYTYAQ KNLPPKKKKP VSKKKMKRER LKQGVAPPGE *
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.22e-23DNA-binding protein S1FA
RefseqXP_024026346.12e-23DNA-binding protein S1FA
SwissprotQ423371e-17S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA32e-22W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.14e-23(Morus notabilis)