PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001841-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 805aa    MW: 89189.2 Da    PI: 5.5119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001841-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.3e-126387226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     kt+lC+ff+r+GtC++G+ C+FaH 
  AHYPO_001841-RA 63 KTSLCSFFRRSGTCSHGEDCRFAHN 87
                     8***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-135793IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-95893IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7566189IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-56188IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-96387IPR000571Zinc finger, CCCH-type
SuperFamilySSF549281.19E-7152230IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005901.97E-6152217No hitNo description
Gene3DG3DSA:3.30.70.3308.3E-7155237IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168745.585266804IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.46E-43269430IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-43480597IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.1E-61494597IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.0E-10538598IPR025714Methyltransferase domain
CDDcd024404.82E-5543589No hitNo description
Gene3DG3DSA:3.40.50.1507.1E-61684744IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-43692749IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.6E-7696740IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300700732IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1507.1E-61779804IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.46E-43788804IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MAESNLPEPK TPLTDSQIPS ITTPTIEEPL TPQSPTNSKR KRDEEEQQLT EENPKKTKHP  60
LHKTSLCSFF RRSGTCSHGE DCRFAHNEEE LQPRPDGSWD PTSKKGKEMA RKEGGEESEE  120
GDGDGDGDDE NSVSVMMTGV MDENGDSQFS KCVIHLSMKW NSDKFKTFLD ELGIVYKEAK  180
KKKGMSVGFI TFETVEQVER ATELLEGKSV GNKTLKVGDV LPRSYDDKIQ SAHKRYQNAK  240
PGASEDDENG EDSNGLASKG KSVCDVVTPL AKLPYAEQLE QKKKSLTKIL IKLTRNARKA  300
LPRGTALPEW IVKSKERGII ESPLVNGYRN KCEFSVGYSV HQKPTVGFLL GNFREGVTAV  360
EEPTNCPNVS KIASTYALVF QEFLQDSSLP IWNRFNNTGF WRQLTVREGR KSHKDGDIQN  420
QEANISEVML VIQKLAGAFS RRAASTSPPL PLTVLAIQDH VGISNVAGAD APLRPLPIPH  480
AQSSSKTVLV SDNNEMRIHD YIGNLRFSIS PTAFFQVNTL AAEKLYSLAG EWAGLDQDTL  540
LFDVCCGTGT IGLTLADRVG MVIGIEMNAS AVSDAQKNAE INGITNCKFA ERVMGSLLRE  600
YLDDSRESDD SQERDDPQEP DDILHTSDTD EKQIDTSENG TASVINEMNP EISLNEVKMD  660
TDHACDSNEG EPDTKNNCLT NDGFSSNARR HFKNVVAIVD PPRGGLHPTV IKALRTHPRL  720
RRLVYISCNP ETLVANAIEL CTPLSENNEK KGKVWRWKNM SDASQARHRL KSMPMSEPFQ  780
PVKAMAVDLF PHTSHCELVM LLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-15499600263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-15499600262371Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-15499600263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689563.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0K9QW580.0A0A0K9QW58_SPIOL; Uncharacterized protein
STRINGXP_010689563.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]