PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001850-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 226aa    MW: 24647.7 Da    PI: 8.2237
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001850-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.51.2e-3413107194
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCaaCk++r++C+++C+lap fpae+ ++f++vhk+FG+snv+k++++l ++e+r++a++slv+eA +r++dPv G +g ++k++ +l++ +++
  AHYPO_001850-RA  13 ACAACKHQRKRCTDKCILAPFFPAEKVREFQAVHKVFGVSNVQKMVRNLvSDEDRKRAADSLVWEALCRQKDPVLGPYGEYRKINDELKSYQSQ 106
                      7***********************************************978888***********************************99886 PP

           DUF260  94 l 94 
                       
  AHYPO_001850-RA 107 G 107
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.93212116IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3313107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNRNNGISST HQACAACKHQ RKRCTDKCIL APFFPAEKVR EFQAVHKVFG VSNVQKMVRN  60
LVSDEDRKRA ADSLVWEALC RQKDPVLGPY GEYRKINDEL KSYQSQGQSQ MLHHQLNPFV  120
TQNGLNNGSG HKSGNGLIGW SINTNGSGGI SSKMNYSGMS DNVALVDCIR AQCGPVLGSG  180
LYGNCGSHED LHGVEKMRHN LDANVGQISS MDAKPIEGSL WEAES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-181410612103LOB family transfactor Ramosa2.1
5ly0_B5e-181410612103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688578.11e-129PREDICTED: LOB domain-containing protein 2
SwissprotQ9LNB95e-48LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A2I4EXR89e-53A0A2I4EXR8_JUGRE; LOB domain-containing protein 2-like
STRINGXP_010688578.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.18e-48LOB domain-containing protein 2