PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001902-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 339aa    MW: 38563.7 Da    PI: 4.635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001902-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-05164202732
                      HHHHHHHHHHHHHHHHHHCTSCC.C.............. CS
              HLH   7 erErrRRdriNsafeeLrellPk.as............k 32 
                      + Er+RR r+++++  Lr l+P+               +
  AHYPO_001902-RA 164 ISERKRRGRMKEKLYALRALVPNiTKvfgdavlyvqdlQ 202
                      67********************95535665555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.696157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-10158217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-5159204No hitNo description
Gene3DG3DSA:4.10.280.101.2E-9159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDNSNSSSNT IPSIPLINDF NLDFIDQDLN FNHVINMLRG SNHDHDHDHD QNFDPSSLLF  60
TRNDVSDNYS MNFLPIPTHE NHVFNNFNSP TMSCTNNNTN ILNSFSGFED ETLRGDQDED  120
QDEDEDDEDY MDGEHSSATT TTTTRKGNEK CTKKGKMDRS RTLISERKRR GRMKEKLYAL  180
RALVPNITKV FGDAVLYVQD LQMQAKKLKS QIEGLESSLN AAERCQGPFS DSTNNSLNQF  240
VPACKIIVQM DVVQIEEREF YVKVVSNKGQ GVAASLYKAL DSFTTFTIQN SNLSTLYEQF  300
VFTFTLNVAK CREDFNLPNM KMWISGAFLN QGFEFQSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689160.11e-163PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0K9RZ498e-84A0A0K9RZ49_SPIOL; Uncharacterized protein
STRINGXP_010689160.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-78FER-like regulator of iron uptake