PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001937-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 411aa    MW: 44840 Da    PI: 5.0858
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001937-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-05544639
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++e +   +C++++ +lC +C  + H+       H++
  AHYPO_001937-RA  5 CDYCGELRSLVYCRSDSAFLCLSCDRNVHSAnalskrHSR 44
                     ******99*********************65667777765 PP
2zf-B_box24.74.9e-084688442
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                      +C++++ +++   C d  + lC++C +e+H+g    H+++++
  AHYPO_001937-RA 46 LVCERCNAQPAFVRCIDEAVSLCQKCNVEGHNGnssiHKLQNI 88
                     68*****************************9999***99865 PP
3CCT59.61.1e-20353395143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      R +a++RYkeK+k RkFeK++rY+sRK++A+ R+RvKGrF k+
  AHYPO_001937-RA 353 RTEAVMRYKEKKKIRKFEKRVRYASRKTRADGRKRVKGRFIKA 395
                      89**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.257147IPR000315B-box-type zinc finger
CDDcd000215.09E-8447No hitNo description
SMARTSM003369.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7024388IPR000315B-box-type zinc finger
SMARTSM003364.14888IPR000315B-box-type zinc finger
PROSITE profilePS5101715.18353395IPR010402CCT domain
PfamPF062036.1E-16353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGYLCDYCGE LRSLVYCRSD SAFLCLSCDR NVHSANALSK RHSRTLVCER CNAQPAFVRC  60
IDEAVSLCQK CNVEGHNGNS SIHKLQNINY YTGCPSSTEL SKIWSFFLDI PFASSDNPTC  120
QEGLGSLSIS ESNAKNCMDP VREDDDQGAL VVGSGNDIHS VNKSNFWGGP VSIPELISRE  180
CPDPPGCAES SEVFYPTDRV PGICEDDLYA DLEMDEVDIN FENYEELFGV TLTHSEQLLE  240
NGGINSLFPR QDMRKADSNR PGGLCAEGTS VGIAGRIQPA CSNAASADSL MSVKTEPPIG  300
FATKQAQSGL SFSGITGESS GGDYQDCGAS SMILHGEPPW CPPCPENSVQ SSRTEAVMRY  360
KEKKKIRKFE KRVRYASRKT RADGRKRVKG RFIKAGDAYD YDPLNHTSSV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383389GRKRVKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745942.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021745943.10.0zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-131COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A061DL860.0A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGXP_010689670.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-120B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]