PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001938-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 333aa MW: 38175.2 Da PI: 6.8833

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001938-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.5e-52	11	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+d+elv++yL +k ++++++++e + evd++k+ePwd+p++v + kewyf+s+rd+kyatg r+nrat+sgyWkatg AHYPO_001938-RA 11 LPPGFRFHPRDDELVCDYLMNKWNNNNNNINEslshhssLLIEVDLNKCEPWDIPETVCVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATG 104 79*******************9999555444555554699*********8888899**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v + kg+lvg++ktLvfy+grapkg+kt+Wvmhe+rl AHYPO_001938-RA 105 KDRPVSR-KGNLVGMRKTLVFYQGRAPKGKKTNWVMHEFRL 144 *99.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-59	3	170	IPR003441	NAC domain
PROSITE profile	PS51005	54.975	11	170	IPR003441	NAC domain
Pfam	PF02365	9.4E-27	12	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSSLTMVEAR LPPGFRFHPR DDELVCDYLM NKWNNNNNNI NESLSHHSSL LIEVDLNKCE 60 PWDIPETVCV GGKEWYFYSQ RDRKYATGLR TNRATASGYW KATGKDRPVS RKGNLVGMRK 120 TLVFYQGRAP KGKKTNWVMH EFRLDGPFAP PKFTSSSKQE DWVLCRVFYK KEIGSKYDDH 180 DASQHDHNEG NNSLDETSSS TLPPLMDHSY ITFDHHHHQN QLNSCYNQHV PCFSITSSSS 240 NNHDHDHNHN NHANYGNNYS SLFYQNNHNF QMIHDDDPGN GNNVDCDKKV LEVVLAQLTK 300 MEPSIPSETL LASPNLGQIT NVSQVGLPPH MWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-52	6	176	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-52	6	176	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-52	6	176	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-52	6	176	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	6	176	15	174	NAC domain-containing protein 19
3swm_B	1e-51	6	176	15	174	NAC domain-containing protein 19
3swm_C	1e-51	6	176	15	174	NAC domain-containing protein 19
3swm_D	1e-51	6	176	15	174	NAC domain-containing protein 19
3swp_A	1e-51	6	176	15	174	NAC domain-containing protein 19
3swp_B	1e-51	6	176	15	174	NAC domain-containing protein 19
3swp_C	1e-51	6	176	15	174	NAC domain-containing protein 19
3swp_D	1e-51	6	176	15	174	NAC domain-containing protein 19
4dul_A	9e-52	6	176	12	171	NAC domain-containing protein 19
4dul_B	9e-52	6	176	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010666181.1	1e-141	PREDICTED: NAC domain-containing protein 21/22 isoform X2
Swissprot	Q84TE6	1e-103	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A0J8B8I0	1e-139	A0A0J8B8I0_BETVU; Uncharacterized protein
STRING	XP_010666180.1	1e-138	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-98	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	AHYPO_001938-RA

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]