PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001952-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 411aa    MW: 46993 Da    PI: 5.1349
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001952-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35151062102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+++++++sws+n++sf+v+++ +f++++Lp++Fkh+nf+SFvRQLn+YgFkkv+ e+         weF+++ F kgk +ll+
  AHYPO_001952-RA  15 FLAKTYEMVDDPTTNSIVSWSSNSKSFIVWNPPDFSRDLLPRFFKHNNFSSFVRQLNTYGFKKVDPEQ---------WEFANDDFIKGKPHLLK 99 
                      9***************************************************************9998.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  AHYPO_001952-RA 100 NIHRRKP 106
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMDEIQGGSN ALPPFLAKTY EMVDDPTTNS IVSWSSNSKS FIVWNPPDFS RDLLPRFFKH  60
NNFSSFVRQL NTYGFKKVDP EQWEFANDDF IKGKPHLLKN IHRRKPVHSH SLNTLHGQVN  120
SNPLTDSERQ KYKDDIEHLT HERDILLMEF QKQRQEEQGL ESHAQGLRDR LQHMERRQYS  180
FASFFARALQ KPELALIPQL ENNDRKRRVS SRPELFHDET SNEDSSMCTI RTTRRGSPDV  240
GFGLDIDYEL LEMMESSLHF WEKVFEDLES LSVQRNSSFE FAESTTCAQS PAISYTQLNA  300
DDPSNSSRID MNSDPPATAS VVAPDPIPPE EKESGTAKAV AQGPNDVFWE QFLTENPGSS  360
EVQEVQSERK DSGIREKDSR LIDHGRYWLG FKNSNNIPEH IGQLTPAGSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-22710412120Heat shock factor protein 1
5d5u_B9e-22810422129Heat shock factor protein 1
5d5v_B9e-22810422129Heat shock factor protein 1
5d5v_D9e-22810422129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665682.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotO494031e-107HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0J8B6M90.0A0A0J8B6M9_BETVU; Uncharacterized protein
STRINGXP_010665682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-102heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]