PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002020-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YB
Protein Properties Length: 234aa    MW: 25489.8 Da    PI: 6.222
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002020-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB106.12.3e-33791403697
            NF-YB  36 qecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                      +ecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yrelege+
  AHYPO_002020-RA  79 NECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 140
                      69**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.88E-2472142IPR009072Histone-fold
PRINTSPR006151.2E-157896No hitNo description
PfamPF008087.2E-1279114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-2979144IPR009072Histone-fold
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-1597115No hitNo description
PRINTSPR006151.2E-15116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRLTSEVLPA EMNHIRSTSN GKGVSHDMNN HTNNHHPYNN SNNNNNGFSN GNSNHSASTD  60
QDNNECTVRE QDRFMPIANE CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSKLGFD  120
DYIEPLTLYL HRYRELEGER GSIRTCEPLL KLSRAAMDQY AAFGPVFHIG PPPTHHPGYY  180
GGPSSVNGYL KDASAVAGSD TNAHSQPSAV TAAAGGGGSA NSVASFEPYG QHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4167135597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766650.11e-104nuclear transcription factor Y subunit B-6-like
TrEMBLA0A0K9QFL93e-96A0A0K9QFL9_SPIOL; Uncharacterized protein
STRINGXP_010686691.11e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-51nuclear factor Y, subunit B6