PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002079-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 571aa    MW: 62605.7 Da    PI: 7.3234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002079-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30305363259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  AHYPO_002079-RA 305 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 363
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-33289365IPR003657WRKY domain
SuperFamilySSF1182907.32E-28297365IPR003657WRKY domain
PROSITE profilePS5081129.562299365IPR003657WRKY domain
SMARTSM007741.8E-36304364IPR003657WRKY domain
PfamPF031061.3E-26306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDGGGWGLAL ESSSSSSDHN KLITPNNFSI HHNINKNEMF KGLEFPINLK RRSGNQMENH  60
DHHNRDDHNR DDRNGKTVVD VLNFFPESKE ITGLHLHTNN TGSDQSTIDD SASSDIEDKK  120
NKNELTILQG ELQRMNTENE RLKILLQQVH TNYMHLENQM KQANFEIAKN KACTHRKVDE  180
MQTMQGQFLN LAPKDNNEVD ELTSKTVSDD EKTIERSSSP QNTIEVVSVR TNNKDVMLSN  240
YDHGKRIREQ SVEELEAKRW QNKVPQLMNN VLKPTSPPID HSANEATMRK VRVSVRARSE  300
APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDRT ILITTYEGTH  360
NHPLPPAAVP MVETTSSAAT MLLSGSMPSG DGLMNPNFLA ARTILPCSSS VATISASAPF  420
PTVTLDLTYS PNPLQQRPSI PFPPPNAQVG PNLLGSIPQI FGQALLNSSN NQSKFSGLQT  480
STPQSLNAAH LQPSNQNAAF NETLSAATAA LTSDPNFTAA LVAALSSIIG GATRHPTENN  540
HTSNNAGGNS PSGATNNAKN DASNNNMQQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22292367276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686807.10.0PREDICTED: probable WRKY transcription factor 31 isoform X2
SwissprotQ9XEC31e-123WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0K9S1P80.0A0A0K9S1P8_SPIOL; Uncharacterized protein
STRINGXP_010686806.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-117WRKY family protein