PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002095-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 243aa    MW: 27824.1 Da    PI: 6.9406
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002095-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-15127189163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+e++r +r+++NRe+ArrsR+RK++++e+L+  v +L + N++L+++l+   +  ++l +e+
  AHYPO_002095-RA 127 EQEIRRLKRMISNRESARRSRLRKRKQLENLQSQVLQLLSANHQLAEKLNLVMESNYELLQEN 189
                      6899********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-11121185No hitNo description
SMARTSM003381.6E-14127191IPR004827Basic-leucine zipper domain
PfamPF001709.4E-14127189IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.438129192IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10131184No hitNo description
CDDcd147026.45E-17132180No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
IVSFLCLINY LTLYATSLLS LFIIHFTKKT SEKHLNNNMY QNDKDKGFQI LPSNPKNQPN  60
NTYESQFSIS SSNSNNKFLP NLHSYLPLHD LTSLNTTLDH TSSCNPNNSI NPIISSNDEP  120
NNEQDEEQEI RRLKRMISNR ESARRSRLRK RKQLENLQSQ VLQLLSANHQ LAEKLNLVME  180
SNYELLQENS RLRDESICLR NELLISMKCD MGLDDNGVCT RANNQSHDNS PNSITSSMDV  240
LH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRSRLRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686844.12e-96PREDICTED: G-box-binding factor 3
TrEMBLA0A0K9RMA62e-67A0A0K9RMA6_SPIOL; Uncharacterized protein
STRINGXP_010686844.17e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.12e-08basic leucine-zipper 70