PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002215-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HRT-like
Protein Properties Length: 445aa    MW: 49775.9 Da    PI: 10.0504
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002215-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.42.1e-17269298130
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                      +CGv+l+dGsvC++ Pvk RKRC++HKG+R
  AHYPO_002215-RA 269 VCGVLLSDGSVCNDLPVKARKRCAKHKGRR 298
                      7****************************9 PP
2HRT-like60.42.8e-19326356131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCGvil dGs+C+++P  gRKRCeeHKGmR+
  AHYPO_002215-RA 326 ICGVILLDGSPCSKPPSTGRKRCEEHKGMRV 356
                      8*****************************7 PP
3HRT-like581.5e-18383412231
         HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      CGv+l+dG +C +qPvkgRKRCe+HKG+R+
  AHYPO_002215-RA 383 CGVNLGDGKFCDMQPVKGRKRCEQHKGKRV 412
                      *****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGGPNHQIPK SAITSNPSRL KREDFSRTKH DKSFSKWKIL IGPSDWEDYK ANKEGAERYR  60
VANLPSVCGP GLYEIGVAVC ATGSGRDVDK LGSGSESIVV VYLGQADNVK SRLQHYGRSG  120
SHLVNGFGLF KDVFSRGFPI VYRWAPMSSK SEAERTEAKL LERFDYAWNK VGNDARRPND  180
VLNKIEKISS QHTNVPKIFK MLQSLREQKV GIPIKAEKLP SFDNKPNYDI YRENVSFFDR  240
IFKFSRSQPR LVPHFDYEVI VEKMENAHVC GVLLSDGSVC NDLPVKARKR CAKHKGRRLT  300
SVSKTSIAIP SIERSSIDVT DDFPSICGVI LLDGSPCSKP PSTGRKRCEE HKGMRVNHIM  360
SKSLNLKLVT ERNLSNLDLV DYCGVNLGDG KFCDMQPVKG RKRCEQHKGK RVNAFASNLL  420
PKNQWPNAGH NNVHALPIPD VSHT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687447.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A0K9RRX01e-178A0A0K9RRX0_SPIOL; Uncharacterized protein
STRINGXP_010687447.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.16e-94effector of transcription2