PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002238-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 152aa    MW: 17001.2 Da    PI: 4.8161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002238-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-11771171055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  AHYPO_002238-RA  77 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 117
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.13567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1568132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1372126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-1176121No hitNo description
PfamPF000102.4E-877117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
METNVEMGYG EDHQPAFSDT QLQLKQEYDQ ISEIEPGSED VKCNDSLSSK GTATINSNGK  60
TRASRGAATD PQSIYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQLQI  120
KLLSSDDLWM YAPLAYNGMD IGLDSKIRAL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852168.13e-63transcription factor bHLH54-like
SwissprotQ7XHI92e-58BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0K9RMZ16e-62A0A0K9RMZ1_SPIOL; Uncharacterized protein
STRINGXP_010687357.12e-60(Beta vulgaris)
STRINGXP_002527508.11e-60(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-47bHLH family protein