PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002318-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 367aa MW: 40407.4 Da PI: 6.2667

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002318-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	232	270	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq AHYPO_002318-RA 232 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 270 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-10	230	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-5	230	274	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-7	230	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMAGNPNNWW NMQHNNIRLS STSDDQQHET EVNPTINLLI SQTHPNNSLL TPLQFLHAGS 60 SSSSSSLLPF LSSAEPHTQD HFPHSWSQLL MGGMGSEEER YNDPINEYDE ARRVLNEGVQ 120 LDIKQEITTQ NNNNNLELYG NQFHNNEEQD HQVGVSNTNN RAASTNWTQI IPVSSPKSCI 180 TTLNTNTNNN TNNNNNNNNN MLDFSTNKST NGGVPPKKPR VQSSSTPPLK VRKEKLGDRI 240 TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEALSSPY MGNNHASAMN QHVVHGERNC 300 LFPDHPGQLL NDSCLKRRGA PNQEDNKDGS KDLKGKGLCL VPISCTQLVG SENGADYWAQ 360 SLGGGF*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMAGNPNNWW NMQHNNIRLS STSDDQQHET EVNPTINLLI SQTHPNNSLL TPLQFLHAGS  60
SSSSSSLLPF LSSAEPHTQD HFPHSWSQLL MGGMGSEEER YNDPINEYDE ARRVLNEGVQ  120
LDIKQEITTQ NNNNNLELYG NQFHNNEEQD HQVGVSNTNN RAASTNWTQI IPVSSPKSCI  180
TTLNTNTNNN TNNNNNNNNN MLDFSTNKST NGGVPPKKPR VQSSSTPPLK VRKEKLGDRI  240
TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEALSSPY MGNNHASAMN QHVVHGERNC  300
LFPDHPGQLL NDSCLKRRGA PNQEDNKDGS KDLKGKGLCL VPISCTQLVG SENGADYWAQ  360
SLGGGF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691374.1	1e-151	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	3e-60	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0K9RUD3	1e-144	A0A0K9RUD3_SPIOL; Uncharacterized protein
STRING	XP_010691374.1	1e-150	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_002318-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]