PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002339-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GATA

Protein Properties

Length: 657aa MW: 72392.5 Da PI: 9.424

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002339-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.1	1.2e-18	395	428	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt kTp+WR+gp+g+k+LCnaCG+++++ + AHYPO_002339-RA 395 CMHCGTVKTPQWRSGPQGPKSLCNACGVRFKSDR 428 99*****************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.886	389	425	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.2E-14	389	439	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.9E-13	390	450	No hit	No description
Gene3D	G3DSA:3.30.50.10	8.7E-15	394	427	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.04E-14	394	442	No hit	No description
PROSITE pattern	PS00344	0	395	420	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.3E-16	395	428	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MDDSFTTKCL AIPSNLEKGP NRCSPTPSIF IKFPSLPNNE FNQCDMTPLA STQSTSNTGS 60 KQGNTTLPTL NQLILSTGSN QGDTTPLASI QSTPNTESKK GGTSQSTSIQ FTPNIGCMQG 120 DTNPSTFTQS TPNTRFNQGD TTPLASTQFT PNIGSKQGDR IPPSSTQSTR NTRSKQGDTT 180 PPTFTQFTPN SKSNQGDTTP LASTQFTPNT RSKQSNTTPP TFTQFTPNSR SNQGDTTPLT 240 SIQFTPNIGS KQDDMTPPTS TESPSNIESK QGDTTPPTFT QSTPKIGSNQ GKTISLSSTQ 300 FTPHTSSKQG GTASTTSTQT TPNTGSKQED TTALTFTQST PNTESNQSDT TSLEFTQLTS 360 GSAQRKRSHY PASLESEPKL KKRSSKKRPE GDLKCMHCGT VKTPQWRSGP QGPKSLCNAC 420 GVRFKSDRLY PEYRPAASPT FKLNEHSNTH RKVLDIRRQR GLDLPPPIPQ QPQSITHVHQ 480 QQQLFNVPQQ QQLISNDQRQ QLQLTSNCQP QQLISDFQNS LSPTFKPYEH SNTHRKVINT 540 QRQRQQDSLP PIPQQAQLIT HVHQQQQLFS VPQQQQQLIS DDQQQLLQLI SYLQQQQLIS 600 DFQNYASLRF KPDEHSNTHQ NVLDIQRQSQ QDSLPPIPQQ PQSITHCCST TTTTIN*

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MDDSFTTKCL AIPSNLEKGP NRCSPTPSIF IKFPSLPNNE FNQCDMTPLA STQSTSNTGS  60
KQGNTTLPTL NQLILSTGSN QGDTTPLASI QSTPNTESKK GGTSQSTSIQ FTPNIGCMQG  120
DTNPSTFTQS TPNTRFNQGD TTPLASTQFT PNIGSKQGDR IPPSSTQSTR NTRSKQGDTT  180
PPTFTQFTPN SKSNQGDTTP LASTQFTPNT RSKQSNTTPP TFTQFTPNSR SNQGDTTPLT  240
SIQFTPNIGS KQDDMTPPTS TESPSNIESK QGDTTPPTFT QSTPKIGSNQ GKTISLSSTQ  300
FTPHTSSKQG GTASTTSTQT TPNTGSKQED TTALTFTQST PNTESNQSDT TSLEFTQLTS  360
GSAQRKRSHY PASLESEPKL KKRSSKKRPE GDLKCMHCGT VKTPQWRSGP QGPKSLCNAC  420
GVRFKSDRLY PEYRPAASPT FKLNEHSNTH RKVLDIRRQR GLDLPPPIPQ QPQSITHVHQ  480
QQQLFNVPQQ QQLISNDQRQ QLQLTSNCQP QQLISDFQNS LSPTFKPYEH SNTHRKVINT  540
QRQRQQDSLP PIPQQAQLIT HVHQQQQLFS VPQQQQQLIS DDQQQLLQLI SYLQQQQLIS  600
DFQNYASLRF KPDEHSNTHQ NVLDIQRQSQ QDSLPPIPQQ PQSITHCCST TTTTIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	3e-32	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	AHYPO_002339-RA