PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002367-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 408aa    MW: 44460.4 Da    PI: 6.678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002367-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12123168247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT++E+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  AHYPO_002367-RA 123 KPWTEDEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 168
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.204117173IPR017930Myb domain
SuperFamilySSF466898.97E-16119173IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-18120172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10121167IPR009057Homeodomain-like
SMARTSM007171.0E-9121171IPR001005SANT/Myb domain
PfamPF002492.7E-10123168IPR001005SANT/Myb domain
CDDcd001671.74E-8124169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RSNAAAATNS SSNSTSSNAG GGGGSGGGGG IRLFGVRLTD  60
GSFMKKSASM GNLSHHHSNY SSPNNNNTTS PSSDPLRLDG YLSDDPNHAS CSSNRRSERK  120
KGKPWTEDEH RLFLIGLQKL GKGDWRGIAR NYVVSRTPTQ VASHAQKYFI RQSHATRRKR  180
RSSLFDMVPD MDQDPPLPPP TTLVEVLLVE EFMVVAALLR VGKVQELWPS LVTEEPETVP  240
EDQLLPLPSE PRETENTSSL PSLDLSLCTE TEPMEATSTE EVKENDEPLA LPTNLTPTIP  300
TFFVPVHYHS FWPQAIHPEE DNKGETAQHQ VLKPTPVLRK DPVNADELGI SKLNLSETEN  360
NSHIVPPQLS LNLLGSPSRQ SAFHVSVPVS VSKSEVNEGK NSPVQAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665911.11e-172PREDICTED: transcription factor MYB1R1
TrEMBLA0A0J8B9331e-170A0A0J8B933_BETVU; Uncharacterized protein
STRINGXP_010665911.11e-171(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-74MYB_related family protein