PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002424-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 316aa MW: 34561.4 Da PI: 4.8078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002424-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	41	86	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++RR r+N+ f eL l + +K++Ka+iL+ +++ + +L AHYPO_002424-RA 41 KAGREKQRRCRLNEQFIELGNTLDAD----RPKNDKATILTDTIQMLTDL 86 5669*****************997....79**********998777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-12	35	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.96	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-12	36	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.88E-6	37	90	No hit	No description
Pfam	PF00010	3.9E-6	41	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MNLIPSDGVY LPLPSNPSSE FEIANCEMDS EDPTAARKLQ KAGREKQRRC RLNEQFIELG 60 NTLDADRPKN DKATILTDTI QMLTDLTAEV NKLQAEYAAL SEEARELTQE KNDLREEKAT 120 LKSDIDRLNV QCQQRVGSTY PWVAMDSVLP HPSSYAYHMP IPVASAPSYP PMPMHIPMQP 180 YSFFGSANPG MFANPCSTFV PYMAPNPPAE QPSTQEVSPS TQPGSRTQVS AKQGVGTSSD 240 RQERRSSKKE DSDDVPTNLE LKTPGSTTDE DMETNRKKLV QEKSIAAEGS SSRCSSHSVQ 300 DSSSSSIVGG GKNIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690444.1	1e-142	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	4e-74	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0K9QB23	1e-128	A0A0K9QB23_SPIOL; Uncharacterized protein
STRING	XP_010690442.1	1e-141	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_002424-RA

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]