PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002480-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 537aa    MW: 60394.3 Da    PI: 4.4149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002480-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.3e-54111381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv+gk++++ ++i+e+diykveP+dLp  +k+k++++ewyfFs  d+ky +g+r+nrat++gyWk+tgkd++v
  AHYPO_002480-RA  11 LAPGFRFHPTDEELVWYYLKRKVSGKPFRV-DAISEIDIYKVEPSDLPglSKLKTRDQEWYFFSALDRKYGNGSRTNRATNEGYWKTTGKDRPV 103
                      579***************************.99***************655999999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ k ++vg+kktLv++kgrap+ge+++Wvmhey+l
  AHYPO_002480-RA 104 YH-KCQVVGMKKTLVYHKGRAPRGERSNWVMHEYKL 138
                      **.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-618161IPR003441NAC domain
PROSITE profilePS5100556.79411161IPR003441NAC domain
PfamPF023651.8E-2713138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDPKCSKSTS LAPGFRFHPT DEELVWYYLK RKVSGKPFRV DAISEIDIYK VEPSDLPGLS  60
KLKTRDQEWY FFSALDRKYG NGSRTNRATN EGYWKTTGKD RPVYHKCQVV GMKKTLVYHK  120
GRAPRGERSN WVMHEYKLND DVPENVGISP DGFVLCRVFQ KSGTGPKNGE QYGAPLVEEE  180
WEDSGEPVVP GEVSFDDPYV DDDAYIEEID FDQVLELPEN IHSSVSFNHV EGNNYIEESQ  240
DMSGANHKSV EESDGTFTLE TLDGQNFDDV ARLESIPCVV KNEHMAQPND LSNEAAVALD  300
DLLTDSVNVP FDDELYLDSH DLHPRDFDVL ESNWDDLDFD IGSYLNDDCL PELMDKDLDE  360
GFADHQNVNN ETWEMPLATQ QLPGIDDNGS GSSSHQTMEI KDIQSPCMTR ANRSLSNISG  420
PSAFASEKPS KDMGKHLSAF MPSTPVHVTA GMVRIREMPI GVRENGLQWS FDKNGIISVR  480
LSFDLPQTLV PAELDSLTGF LPKTSTATSR RWLCFMLFLI FVFGLSVKIR TCIYAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-461016716171NO APICAL MERISTEM PROTEIN
1ut4_B9e-461016716171NO APICAL MERISTEM PROTEIN
1ut7_A9e-461016716171NO APICAL MERISTEM PROTEIN
1ut7_B9e-461016716171NO APICAL MERISTEM PROTEIN
3swm_A9e-461016719174NAC domain-containing protein 19
3swm_B9e-461016719174NAC domain-containing protein 19
3swm_C9e-461016719174NAC domain-containing protein 19
3swm_D9e-461016719174NAC domain-containing protein 19
3swp_A9e-461016719174NAC domain-containing protein 19
3swp_B9e-461016719174NAC domain-containing protein 19
3swp_C9e-461016719174NAC domain-containing protein 19
3swp_D9e-461016719174NAC domain-containing protein 19
4dul_A9e-461016716171NAC domain-containing protein 19
4dul_B9e-461016716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694513.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A0K9RU350.0A0A0K9RU35_SPIOL; Uncharacterized protein
STRINGXP_010694513.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-125NAC domain containing protein 2