PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002487-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 703aa    MW: 76733.1 Da    PI: 5.8415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002487-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07283303526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ GtC++Gd C +aHg
  AHYPO_002487-RA 283 PCPEFRK-GTCRRGDMCEYAHG 303
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.5E-1316146IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.98E-1320141IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-662129IPR020683Ankyrin repeat-containing domain
SMARTSM002480.266292IPR002110Ankyrin repeat
PROSITE profilePS5029713.62862169IPR020683Ankyrin repeat-containing domain
CDDcd002041.77E-1064140No hitNo description
PROSITE profilePS500889.75197132IPR002110Ankyrin repeat
SMARTSM002480.006497129IPR002110Ankyrin repeat
SMARTSM003567.3E-6278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4282305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31283305IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5283303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4311341IPR000571Zinc finger, CCCH-type
SMARTSM0035642313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDGLMNNGEK FEAKIGFSQL LELAADNDVD WFKQCIESNP SVIDDMGLWY GRQLGARGMV  60
LEYRTPLMVA SIYGSLGVME VILNSSDVDV NRSCGLDRCN ALHCAASGGS VGAVEAVKML  120
LANGADPSLL DSKGNRPYDV ITVSRMLPEL RIALEDMLMY NGSVDVEDIR DLGNGVKVAP  180
LCIPAPSESR SLSPDLDDHS SPMACKNGNN GPVVSEKKEY PVDPSLPDIK NSIYATDEFR  240
MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG TCRRGDMCEY  300
AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHLPEELR PLYASTGSAV PSPRSMASAA  360
AVMDMAAALN LFPGSPSAAA AMSPSPFTPP FSPSGNGIPH STGWQQQNIP TLHLPGSNVQ  420
ANNLQTSRLR SSLNARDIPA EEFSILQDLE LEQRHALNNM SCFGNLSARS KTMAPSNLDD  480
LFSAEISSPR YPDPLGASSV FSPSHKSAIF NHLQHQQSML SPINTKTFSP KAVDHNLLQA  540
PFGPSSPGMV SSPGMMSSPR AIEPQASFNA RLSALTLRDK QQQMRSLSAR DLGSNLPRDL  600
VPDMAGSPVS VGSWSNWESS SNGRPDWSMN DDDLYRLKRS YTNGHKGDEP DLSWVQSLVK  660
DSPSSDNKEV QTNGLSDSNS NNPVEAVDHS TLGAWLDQIS AQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772071.10.0zinc finger CCCH domain-containing protein 24-like
RefseqXP_021772072.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A314XWL00.0A0A314XWL0_PRUYE; Zinc finger CCCH domain-containing protein 30
STRINGXP_010673641.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]