PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002544-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 306aa    MW: 35591.9 Da    PI: 7.1677
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002544-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36471382102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg+k+ll+
  AHYPO_002544-RA  47 FLTKTYQLVDDPRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGEKHLLC 131
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  AHYPO_002544-RA 132 EIHRRKT 138
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5843136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.49E-3444136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAFLVERSDP VHHHSHSIHL QHHNHQEQHQ EMVFSVSESQ KSVPAPFLTK TYQLVDDPRT  60
DHIVSWGEDE TTFVVWRPPE FARDLLPNYF KHNNFSSFVR QLNTYGFKKV VADRWEFANE  120
YFRKGEKHLL CEIHRRKTPQ HHHQIQYQDQ VLLPPQYLPS PSDDHHNPSW INIDHQQSPL  180
PSPKPNVGPT NDILTALSED NQRLRKRNFM LLSELNHMKT LYNDIIYFIQ NHVKPATPNG  240
NNDQNRPPNF NPMAVTPPKL IELDDQDHPE TAAMNGGDVS KREPIKLFGV PLQSKKRLHL  300
AEGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-214313826131Heat shock factor protein 1
5d5v_B3e-214313826131Heat shock factor protein 1
5d5v_D3e-214313826131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734249.11e-175heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6352e-91HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QJR51e-138A0A0K9QJR5_SPIOL; Uncharacterized protein
STRINGXP_010673780.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-93heat shock transcription factor B4