PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002547-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 240aa    MW: 27593.3 Da    PI: 6.5073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002547-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-16126176356
              AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      y GVr+++ +gr++AeIrdp   + k  r +lg++ ta eAa+a+++a+  ++g+
  AHYPO_002547-RA 126 YIGVRRRP-WGRFAAEIRDP---KrKGYRLWLGTYTTAIEAARAYDRAAFDIRGH 176
                      88******.**********8...3334***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.603125183IPR001471AP2/ERF domain
CDDcd000186.94E-28125184No hitNo description
SMARTSM003803.1E-30125189IPR001471AP2/ERF domain
PRINTSPR003674.2E-11126137IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-21126185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-29126184IPR001471AP2/ERF domain
PfamPF008472.9E-11126176IPR001471AP2/ERF domain
PRINTSPR003674.2E-11165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDYPSPETAI ALQLIEEYLF DDQIQTPTHK LTTSNNSRSS SPPPSSSLSY GQIFETSSKG  60
TTFNISFSKQ GQCQTDTNPF IEYIHSSFQN RINNDDGTSF LFCSQPRKVG STHQMNKKEN  120
NCHWNYIGVR RRPWGRFAAE IRDPKRKGYR LWLGTYTTAI EAARAYDRAA FDIRGHKARL  180
NFPHEVECWS TSSSVKRDVH EQKCMGEKRR RIHDGEIDCI ESFSSFDDND NDNDDDDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231231851274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734838.18e-70ethylene-responsive transcription factor 5-like
TrEMBLA0A0K9RFZ33e-53A0A0K9RFZ3_SPIOL; Uncharacterized protein
STRINGXP_010673999.11e-50(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-19ethylene responsive element binding factor 6