PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002548-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 255aa    MW: 28991.8 Da    PI: 9.949
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002548-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-161362355
              AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     y GVr+++ +gr++AeIrdp   + k  r +lg++ ta +Aa+a+++a+ +++g
  AHYPO_002548-RA 13 YIGVRRRP-WGRFAAEIRDP---NrKGYRLWLGTYNTAIDAARAYDRAAYEFRG 62
                     89******.**********9...6466************************998 PP
2AP247.15.9e-15126172655
              AP2   6 VrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      Vr+++ +gr++AeIrdp   + k  r +lg++ ta +Aa+a+++a+ +++g
  AHYPO_002548-RA 126 VRRRP-WGRFAAEIRDP---NrKGYRLWLGTYNTAIDAARAYDRAAFEFRG 172
                      9*999.**********9...6466************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.26E-151171No hitNo description
SMARTSM003808.9E-301276IPR001471AP2/ERF domain
PROSITE profilePS5103223.0241270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-291271IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-211372IPR016177DNA-binding domain
PfamPF008473.2E-111362IPR001471AP2/ERF domain
PRINTSPR003673.4E-111324IPR001471AP2/ERF domain
PRINTSPR003673.4E-115272IPR001471AP2/ERF domain
PROSITE profilePS5103221.048109180IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-19126182IPR016177DNA-binding domain
SMARTSM003801.9E-28126186IPR001471AP2/ERF domain
PfamPF008471.2E-9126172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-28126181IPR001471AP2/ERF domain
CDDcd000187.20E-14126181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMSYVKNTPH ANYIGVRRRP WGRFAAEIRD PNRKGYRLWL GTYNTAIDAA RAYDRAAYEF  60
RGSKARINFP HEVGRWSIKS SSSTSSSSSF SSSNSSAKTV QVQHAGSKRH RNDEVEKDME  120
DDDYCVRRRP WGRFAAEIRD PNRKGYRLWL GTYNTAIDAA RAYDRAAFEF RGSKARLNFP  180
HEVGHWSSTS LSSSSSFSSL SSNSNSNSNS TPKIGQEQYS SSKRESNDDH VDIEHDDDCL  240
IIDDQPIIKR PRIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-23101821274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734838.13e-38ethylene-responsive transcription factor 5-like
SwissprotQ9LW485e-28ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A3Q7EKJ34e-54A0A3Q7EKJ3_SOLLC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-21ethylene responsive element binding factor 5