PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002669-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 230aa    MW: 26029.1 Da    PI: 9.3674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002669-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.7e-16134220498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++ps+v+   +l lp +f+++  ++ke   ++t+ de+g+++ v +  rk++    +++GWk+F++ ++L +gD v+F+l +rs    +v ++
  AHYPO_002669-RA 134 PMLPSHVTGGFWLGLPSDFCRRS-LPKED-GMVTMVDEQGEEFPVVYLARKRG----MSGGWKGFAEFHELVDGDCVIFQLLSRSVL--KVYII 219
                      6899****************877.45544.49***************555555....89*********************9987776..88877 PP

                      - CS
               B3  98 r 98 
                      r
  AHYPO_002669-RA 220 R 220
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-21126221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-17128221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-21129220No hitNo description
SMARTSM010193.4E-15131222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589131222IPR003340B3 DNA binding domain
PfamPF023629.2E-14135221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVMAKTSYEK CREKRVEENQ KRLEELNLLH LSQAFNNLSP KSSPMKKVGK PRVVEKQMVA  60
VRRSPRVSNN PAPVYAEVTL PRFSSPRKSY GVSKARDFAN RVIATDEVRE YTIEKAEKLC  120
AKLDEEGFPT LIRPMLPSHV TGGFWLGLPS DFCRRSLPKE DGMVTMVDEQ GEEFPVVYLA  180
RKRGMSGGWK GFAEFHELVD GDCVIFQLLS RSVLKVYIIR GSDKEAELD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667517.11e-135PREDICTED: B3 domain-containing protein At5g42700
TrEMBLA0A0J8B6231e-133A0A0J8B623_BETVU; Uncharacterized protein
STRINGXP_010667517.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-65B3 family protein