PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002676-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WOX

Protein Properties

Length: 280aa MW: 30051.4 Da PI: 6.1211

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002676-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.8e-16	38	98	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ AHYPO_002676-RA 38 RSRWTPKPEQILILESIFNSgMVNPPKEETIRIRKLLekfgAVGDANVFYWFQNRRSRSRR 98 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.4	1.7e-34	37	100	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q AHYPO_002676-RA 37 VRSRWTPKPEQILILESIFNSGMVNPPKEETIRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 100 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-9	14	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-14	32	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.515	34	99	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	36	103	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-13	38	98	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEDPSPNKKN NNTESENSSN TKEEKKNNNN STNSEPVRSR WTPKPEQILI LESIFNSGMV 60 NPPKEETIRI RKLLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQASLAAT AASPPLVPPP 120 LLGGSGGCGG GSGVNLLYEL SQNQQQNSSV TTTIGGCSSS VGCFAPCSSV TSISNTNSFG 180 DCGGVDDVFG TFSGIINTTH QLDCHSQGSN LDFQSGLITV FINGVATQVP EGVLDMRSMF 240 GEEVILVHSS GAPVPFNDFG ISLQSLQHGE SYFLVPRLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021728368.1	2e-97	WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	8e-62	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2R6RA15	4e-69	A0A2R6RA15_ACTCH; WUSCHEL-related homeobox like
STRING	XP_010677789.1	2e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	7e-34	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	AHYPO_002676-RA

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]