PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002700-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 337aa MW: 38001.2 Da PI: 8.422

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002700-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.4	3.1e-08	79	101	5	27
CHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkae 27 k++rr+ +NReAAr+sR+RKka+ AHYPO_002700-RA 79 KVQRRLTQNREAARKSRLRKKAS 101 99*******************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-6	77	103	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-27	140	213	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSSTTIQVTN SVTMGIYEPP KAMSRWRDTS KAIVTSNAGA SSSIQAESGH ENKFDYEYAS 60 PEMTEPYLNS EDIARLSEKV QRRLTQNREA ARKSRLRKKA SHMGATLHAN LGFTGHNNSG 120 LAAFEMQYGH WVEEQNRQNC ELRTALEANV SDVDLIMLVD VGLNHYSHLF RIKAEAAKTD 180 VFYLMSGMWR TSVERFFIWI GGFRPSELLN ILMPQLEPLT SLQMDEIGRL RYASRQAEDA 240 LSRGVDKLQQ TLTQIMFAEA LGVEMYGIQM TSALEKLGAI EGFVNQADHL REQALRQMSR 300 ILTPRQAARG MVALGEYFHR LRTLSTLWSA RPRDTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847299.1	0.0	transcription factor TGA7-like
Swissprot	Q93ZE2	1e-117	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0K9QZU2	0.0	A0A0K9QZU2_SPIOL; Uncharacterized protein
STRING	XP_010692601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-119	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_002700-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]