PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002745-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YA
Protein Properties Length: 231aa    MW: 25304.6 Da    PI: 6.4146
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002745-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA40.68.6e-131161383658
        CBFB_NFYA  36 kpylheSRhkhAlrRpRgsgGrF 58 
                       pylheSRh+hAl+R RgsgGrF
  AHYPO_002745-RA 116 MPYLHESRHQHALKRVRGSGGRF 138
                      69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-482141IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-10115138IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.265117141IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGVPAQRYQG SKLLDFSLQD QDSCSTQSTG QSYTSTGSFG ENDLNTRSMC FAQSGFIATH  60
GKHEGDENKF TSSMGTPNYL LAPLQPDYNQ AFPQFAVTFP DQHFSSVMST YGPQAMPYLH  120
ESRHQHALKR VRGSGGRFLN LKKLQESRPA ATTENRKDSG SISLHLYAKT SESEVHQQEF  180
YREVASTTSC SDVTSTSTSD DMYHPLEFTF SGYSSGFGEA AQGGSSRGNY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685336.11e-111PREDICTED: nuclear transcription factor Y subunit A-3
TrEMBLA0A0K9RH521e-91A0A0K9RH52_SPIOL; Uncharacterized protein
STRINGXP_010685336.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.36e-16nuclear factor Y, subunit A3