PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002756-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 604aa    MW: 66748 Da    PI: 6.3243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002756-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09491539348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E  +lvd+v+++G g+W+ I r       +Rt+ ++k++w+++l
  AHYPO_002756-RA 491 AWSLTEVMKLVDGVAKFGAGRWSEIKRLSFssySHRTPVDLKDKWRNLL 539
                      7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.283484543IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-12486545IPR009057Homeodomain-like
SMARTSM007172.7E-9488541IPR001005SANT/Myb domain
SuperFamilySSF466896.71E-16490549IPR009057Homeodomain-like
CDDcd116604.17E-19490540No hitNo description
PfamPF002491.4E-6491539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEMMVGVDRT VVGFIEDGAA NKLGSGLAPL KQGADPIVYK LVKFEFDGRM VPATDDVLIE  60
VDNFLELEKN DMLPMPDVME TLEHVSNKDI TFENPLLEKH EGMSQIKLVE DEEGIRVQAE  120
HSLPTSTSSS KDRLVKVSGS IMEESSSNHH DGLTKSGSTG SQPNFSLIKG EINLDNLSIR  180
ELHETFKATF GRETSVKDKM WLKRRIAMGL TNSCDVSVAS FVINDGKFLK KKEELNENIS  240
CEDSVTGEIS KAGVDGPVNF FAHPNLSEDM VNDTAELKNS FSESGCKSDD NVESRGAKRV  300
RKPTKRYIEE LSDKEKDNVA RSMPSSKRFE KEIGPVKAIL RPASGVHSFD FITRPDNIGG  360
SGVQVPYVSR IRRCRPRKSI TELTKFHASE GTLIRKGDEN SVAVIKSEPD DCISAEEEGK  420
SIPFEEPITS EVKREKQCLS ITSHISQASE PNCVDSENNS PLDNTPGNNS DDHVSTVPTA  480
NGGMRRKHHR AWSLTEVMKL VDGVAKFGAG RWSEIKRLSF SSYSHRTPVD LKDKWRNLLK  540
ASYANSQADK GANPRKNTPV LIPATILVRV RELAELNGQT PQVLRGCNNH NNGSNVNENR  600
SEH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377RRCRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716510.10.0uncharacterized protein LOC110684364
TrEMBLA0A0K9RJ000.0A0A0K9RJ00_SPIOL; Uncharacterized protein
STRINGXP_010685324.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-94TRF-like 6