PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002760-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 456aa    MW: 49954.8 Da    PI: 6.2227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002760-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-15270321155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  AHYPO_002760-RA 270 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 321
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003671.3E-5255266IPR001471AP2/ERF domain
PfamPF008476.6E-10270321IPR001471AP2/ERF domain
CDDcd000181.45E-26270331No hitNo description
SuperFamilySSF541716.15E-18270331IPR016177DNA-binding domain
PROSITE profilePS5103218.979271329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18271329IPR001471AP2/ERF domain
SMARTSM003804.5E-35271335IPR001471AP2/ERF domain
PRINTSPR003671.3E-5311331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNNNNWLGFS LTSQQHQYQH HEHHHQQHQQ AALEEGSSSA PSSPHQNGVV TSFMPLRSDG  60
SLFTNVSFSP QLQAQEWKYG NDGQHPKLED FLGCCYTTSQ DQENKMVINM NALPPSQDQF  120
STQIQTCPYP PNYPQGENVI LTGNCSQTLD CHYSSSPFDG AAISQFKSWL RQNPTVGPTT  180
TTTFNGAQVA SPGPAGCQFQ SLSLSVNPET GPDPGPGPLV EVVDSKKRGQ SKSVCGKELV  240
PRKSLDSFGQ RTSQYRGVTK QSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVKRICS SNTLIASDLA KRPSPNKDSP  360
PALQLEEPLA ITDGHDNDGS NDLTASLMWT SQTDDHNRPQ ECNSSPVYLS PESHKYEECA  420
ISNGENNEVA DDVGLSKHNH LGVVNQVPIF ALWNE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720462.13e-92LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE18e-49AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0K9RH535e-84A0A0K9RH53_SPIOL; Uncharacterized protein
STRINGXP_010685318.18e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-46AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]