PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002762-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 246aa    MW: 28306.5 Da    PI: 7.9963
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002762-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-2380122143
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg+++s+k+ 
  AHYPO_002762-RA  80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNKSKKTT 122
                      79**************************************985 PP
2QLQ47.55.6e-171747232
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
                     aFTa+Q+q+L++Q+l y+y++++ PvPp+L+
  AHYPO_002762-RA 17 AFTASQWQELEQQLLTYRYIISGIPVPPQLI 47
                     8****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-71652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.9E-121748IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.0221752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.59180124IPR014977WRC domain
PfamPF088797.0E-2081121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MIRGRDYNKS RCDGFPAFTA SQWQELEQQL LTYRYIISGI PVPPQLISTV ITDPSAFFPL  60
QQSLPFGWGC FEMGYGRKID PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGKNKSKK  120
TTNSSSSSCS VSSSNDECAI NYHPLMPDKT QVQSFHTTNT TPSFYPFMST QSSSLSTHNC  180
TESTQHSSIA PHWLLDSQSY DQPKKQMRSL DLEADERIMS RFQEFGSNIY QENKEDDTNK  240
LYQNIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719953.13e-83growth-regulating factor 5-like
TrEMBLA0A0K9RH581e-63A0A0K9RH58_SPIOL; Uncharacterized protein
STRINGXP_010685313.12e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5