PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002802-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 471aa MW: 49796.6 Da PI: 10.0468

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002802-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1e-15	393	444	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe++v++L++eN++L+k+ e+ ++ AHYPO_002802-RA 393 RRQRRMIKNRESAARSRARKQAYTMELEQEVQKLKEENQELRKKQAEIVEMQ 444 79****************************************9987776664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.2E-15	387	440	No hit	No description
SMART	SM00338	5.8E-14	389	454	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.783	391	440	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.25E-11	393	442	No hit	No description
CDD	cd14707	4.78E-26	393	447	No hit	No description
Pfam	PF00170	1.5E-13	393	444	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	396	411	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MGSNCNMNFS KSFGNEAGGD MGTEGSGRPP GLGNFALARQ TSIYSLTFDE FQNTLGGMGK 60 DFGSMNMDEL LKNIWSAEET QSIATGAGAT AMAATAAVVA VGSGGQDGGN SGGYLQRQGS 120 LTLPRTLSQK TVDEVWKDIA KEFNGGKDGG KGSNVPQRQQ TLGEITLEEF LVRAGVVRED 180 TQLVDKQNNI GGAGIFGDFS RPNNNTNTNT NIGFGISFQQ PGRGVDLMGN RIPETNHQMS 240 SIQSANLPLN VNGVRTSQQQ VTPTHMSQQS QQPQQQPLYP KQSAVSYGSA MTLSNTAQLG 300 STGMRGGMVG LAEGLNNNLV TSAVNQGGAG LGMVGLGGGG AIGVPAGSPA ALSSDGLARS 360 NGDSSSVSPV PYMFNGGLKG RRGLGSVDKV AERRQRRMIK NRESAARSRA RKQAYTMELE 420 QEVQKLKEEN QELRKKQAEI VEMQKNQVME MMNAQAGSRK KLRRTQTGPW *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MGSNCNMNFS KSFGNEAGGD MGTEGSGRPP GLGNFALARQ TSIYSLTFDE FQNTLGGMGK  60
DFGSMNMDEL LKNIWSAEET QSIATGAGAT AMAATAAVVA VGSGGQDGGN SGGYLQRQGS  120
LTLPRTLSQK TVDEVWKDIA KEFNGGKDGG KGSNVPQRQQ TLGEITLEEF LVRAGVVRED  180
TQLVDKQNNI GGAGIFGDFS RPNNNTNTNT NIGFGISFQQ PGRGVDLMGN RIPETNHQMS  240
SIQSANLPLN VNGVRTSQQQ VTPTHMSQQS QQPQQQPLYP KQSAVSYGSA MTLSNTAQLG  300
STGMRGGMVG LAEGLNNNLV TSAVNQGGAG LGMVGLGGGG AIGVPAGSPA ALSSDGLARS  360
NGDSSSVSPV PYMFNGGLKG RRGLGSVDKV AERRQRRMIK NRESAARSRA RKQAYTMELE  420
QEVQKLKEEN QELRKKQAEI VEMQKNQVME MMNAQAGSRK KLRRTQTGPW *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716588.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-124	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	B5QTD2	0.0	B5QTD2_BETVU; ABA-responsive element binding protein 1
STRING	XP_010685236.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-101	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	AHYPO_002802-RA

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]