PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002804-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 390aa    MW: 43008.4 Da    PI: 4.5371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002804-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19120169255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  AHYPO_002804-RA 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169
                      69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.092120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32120179IPR001471AP2/ERF domain
CDDcd000182.83E-32120178No hitNo description
SuperFamilySSF541714.84E-22120178IPR016177DNA-binding domain
SMARTSM003805.6E-37120183IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PfamPF008478.9E-12121169IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MCGGAVISDY IPPGISHRLT ADYLWPDLKA ANTKKGNSGY SKPLRSGVIN LEEDNDDDQA  60
FEADFLDFKD DSDEESFIST PHFKPFSFGD FKSKQPSNGL KPTEFNSQAE KSAKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPEEA  180
PVASATPRRT VKARSQKPAA KMNSTTPSQN ISQNFNVLNN AENEYFNNFA FVEEKPQVIP  240
AVGELEFKPF SAPSDAAAAA ALYFNSDEGS NSLDYSDFGW GENAPKTPEI SSFFAAALDN  300
EGVQVLDDGN AAKKMKFASE EALPVEQNIE KSLSEELSDA DFDSLLETTP YLDENWAINA  360
FLGGNATNDG LNPMDLWSFD DLPALGGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-211191861381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720392.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021720393.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLB6UZ631e-176B6UZ63_9CARY; Dehydration-responsive element binding protein
STRINGXP_010685231.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-64related to AP2 12