PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002926-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 339aa    MW: 38419 Da    PI: 5.2193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002926-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.71.5e-20138190259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+nWrKYGqK++ g++fpr      s+gCp++k+v+rs++dp+++++tY+g+H+++
  AHYPO_002926-RA 138 EDGHNWRKYGQKDILGAKFPRL-----SQGCPATKHVQRSEDDPNFFDVTYRGKHTCS 190
                      8********************6.....89***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.845132187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-20134191IPR003657WRKY domain
SuperFamilySSF1182901.83E-18136191IPR003657WRKY domain
SMARTSM007741.8E-28137191IPR003657WRKY domain
PfamPF031064.7E-19138189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MENIVNDSSL KGLVNELVEG RELTREIQLN LSEPHLSYDE AYGLIAKKIL AKFENSLQIL  60
GYDSIDQLQI QFQQVKTETT DSPNSFSGSP KSQDSDGAFK GALEQKDESK KRKDRDNYYR  120
VTQRLPSSPS SGLESPIEDG HNWRKYGQKD ILGAKFPRLS QGCPATKHVQ RSEDDPNFFD  180
VTYRGKHTCS HASSSSSSSS EPNKQTLKLE PINFPSNPPH YPQNIMWDFK RSNYCNVKHD  240
DKPINPNTIM GNYNDNNNNF VNHGNYPTYN TSSYTNTYQS CPLSNLINNN NYENHQQEVG  300
LIQEIVQPLP STSHPFLDHQ GDDHFDGDFI IDDTNLFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112QKDESKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671912.15e-90PREDICTED: probable WRKY transcription factor 53
STRINGXP_010671912.12e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-24WRKY DNA-binding protein 70