PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002927-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 304aa    MW: 34274.9 Da    PI: 6.4204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002927-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.79.9e-28125185259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+nWrKYGqKe+ g++f+r+YYrCt++   gCp++k+v+r+++dp+++++ Y+geH+++
  AHYPO_002927-RA 125 EDGFNWRKYGQKEILGAKFTRAYYRCTYKqiqGCPATKQVQRCEDDPSFFQVSYRGEHTCS 185
                      8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.403119182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-27120186IPR003657WRKY domain
SuperFamilySSF1182905.36E-25123186IPR003657WRKY domain
SMARTSM007744.6E-37124186IPR003657WRKY domain
PfamPF031061.3E-26125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKGLIDELV EGRDLAWELQ LNLSNEPKSS TNEAHVLMVQ SILAKFERSL QILQNDSKLV  60
STQVHKPIMG KVESPSSYNG SPKSQDSDGD FKVNNKNDSR KRRNSPRVTQ RVEGCTSSGL  120
EGPIEDGFNW RKYGQKEILG AKFTRAYYRC TYKQIQGCPA TKQVQRCEDD PSFFQVSYRG  180
EHTCSHTSSS SSSSFPNNPN NTTKLEPFET LSFNSSHHPH QQYQNIVWDF KRDNVLNHHN  240
SSSFAFTTNN PLVNTNFVPK ENVCYDDAMV QPATASTDLS PSIASELLFD FQAEIENDFS  300
RVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19124184868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671912.14e-96PREDICTED: probable WRKY transcription factor 53
STRINGXP_010671912.12e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-31WRKY family protein