PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002929-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 177aa    MW: 19681.1 Da    PI: 4.905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002929-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY25.52.7e-0840702959
                     STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 29 sagCpvkkkversaedpkvveitYegeHnhe 59
                     ++gC ++k v+rs++dp+ +++tY g H+++
  AHYPO_002929-RA 40 FPGCLATKLVQRSEDDPSSFNVTYLGAHKCS 70
                     579**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.8E-53271IPR003657WRKY domain
SuperFamilySSF1182905.49E-74071IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-74071IPR003657WRKY domain
PfamPF031061.1E-64169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLFELQKELK VVLIVDFKDQ LKINLSGESM DKKTLLEPNF PGCLATKLVQ RSEDDPSSFN  60
VTYLGAHKCS QTSSSSFSSP SIIKNPKPIK IEPPLETLAH PSCQQSKENM LIFQNQNNPF  120
SFSFSSSSNP NLDDNNVCSN SSYCTNINFN DQVFNASTTL EPNSSLIAPI HPNLFDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-