PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003009-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 291aa    MW: 30852.9 Da    PI: 7.3959
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003009-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.67.1e-324107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+ql+q
  AHYPO_003009-RA   4 SCNGCRVLRKGCSEDCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGQWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                       ++e++l ++
  AHYPO_003009-RA  98 NAVEAVLKGA 107
                      ***9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.8E-911282IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8793109IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQNAV EAVLKGAPIT PIPTEAAANP  120
PPPIQGAYDI RHVSKDEHAT SNCSAGLHKV KPTRTRFKRT GSKPKPTQST AASLSALQMM  180
AAAAADADTE STRPDSAELN GSSTSHDSTV SHPDEPTSTM DMTEVTADVC DVAEKNVRNG  240
GRGGSDGEVE LELTLGFGFD SVVSTESKSR KVSHGNTDQG VVCGMKLGLV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755125.11e-158LOB domain-containing protein 40-like
SwissprotQ9M8868e-83LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9REJ11e-155A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGXP_010693111.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-78LOB domain-containing protein 41