PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003040-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 198aa MW: 22758.1 Da PI: 4.7052

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003040-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.9e-17	15	63	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll ++++++G + +Wk+++++ g++R++k+c+ rw++yl AHYPO_003040-RA 15 KGPWSEEEDDLLRKCIEKYGEDsCWKRVPQRAGLNRCRKSCRWRWLNYL 63 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.83	10	67	IPR017930	Myb domain
SMART	SM00717	1.3E-12	14	65	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	15	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.39E-17	16	87	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-21	16	69	IPR009057	Homeodomain-like
CDD	cd00167	1.01E-9	17	63	No hit	No description
SMART	SM00717	25	68	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	70	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEDHNGAKCE SKVRKGPWSE EEDDLLRKCI EKYGEDSCWK RVPQRAGLNR CRKSCRWRWL 60 NYLKPGIKRG DFSEDEANII ASQHKLLAKL PGRTINDVKN YCSTQLYKDY ISSHEVTLTT 120 TEDTNGLGVG PGNGFGLEVN EQNDNDNWLE NLLGSDEYSS HNYSGPIIGP LLEDEEFHNN 180 ENMDQWISSL RDEPNMPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-12	15	108	7	106	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Activates DODA1 and CYP76AD1 in the betalain red pigment pathway. {ECO:0000305\|PubMed:25436858}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: This recessive y allele is expressed at low levels, resulting in an inner white flesh of the beet. However, yy plants still can make pigments but never make as much of it or have it in the same location as YY or Yy plants with an inner red flesh. {ECO:0000305\|PubMed:25436858}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693978.1	3e-50	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB1-like
Swissprot	M1ETK3	2e-53	MYB1W_BETVU; Transcription factor MYB1
TrEMBL	A0A2P1A476	1e-112	A0A2P1A476_AMATR; Transcription factor MYB2
STRING	XP_010693978.1	1e-49	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	7e-37	myb domain protein 113

Link Out ? help Back to Top
Phytozome	AHYPO_003040-RA

Publications ? help Back to Top
Stracke R, et al. Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris). BMC Plant Biol., 2014. 14: p. 249 [PMID:25249410] Hatlestad GJ, et al. The beet Y locus encodes an anthocyanin MYB-like protein that activates the betalain red pigment pathway. Nat. Genet., 2015. 47(1): p. 92-6 [PMID:25436858]