PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003060-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 320aa MW: 35461.3 Da PI: 5.8945

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003060-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.8	1.7e-17	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eY+++Lq AHYPO_003060-RA 46 RSKHSETEQRRRSKINERFQILRDLIPPN----DQKRDKASLLLEVIEYVQYLQ 95 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-19	41	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-22	41	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.384	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-15	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-16	46	99	No hit	No description
SMART	SM00353	3.3E-14	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVRTIKPPHH QNHEEEYEDA EDVAAGTDTS SHREGKSAEQ KPNNYRSKHS ETEQRRRSKI 60 NERFQILRDL IPPNDQKRDK ASLLLEVIEY VQYLQEKVQV YEGSYQQVWS HEPTKLTPWR 120 ANHGLVDNIV NHSQAMKNGF LDENTAVQPM PSMQGSVESE LSGEFPYRAD HAVRPVNPVI 180 PLSIPLPSCA YPPGRGIQLI ENLAFQPHGS VDGAIIETED RPLERGSSSV SDVYSQELLK 240 RLTQSLQTSG VDLSHANISV QLDVGKQVHS GSNAIAPSVG VCSQDVDNQT PNNQPISHAV 300 EVSAKESIQA AKRLKTGES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021736897.1	1e-162	transcription factor BIM2-like
Refseq	XP_021739378.1	1e-162	transcription factor BIM2-like
TrEMBL	A0A0K9R0G2	1e-158	A0A0K9R0G2_SPIOL; Uncharacterized protein
STRING	XP_010694243.1	1e-144	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-57	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	AHYPO_003060-RA